Advances in bioinformatics and computational biology / Brazilian Symposium on Bioinformatics, BSB 2005, Sao Leopoldo, Brazil, July 27-29, 2005 proceedings ; João Carlos Setubal, Sergio Verjovski-Almeida (eds.)
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| Format: | Conference Proceeding eBook |
| Language: | English |
| Published: |
Berlin ; New York :
Springer,
c2005.
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| Series: | Lecture notes in computer science ;
3594. Lecture notes in computer science. Lecture notes in bioinformatics. |
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Table of Contents:
- [Pt. 1] Invited papers:
- Differential Gene Expression in the Auditory System / Irene S. Gabashvili, Richard J. Carter, Peter Markstein, Anne B.S. Giersch
- Searching for Non-coding RNA / Walter L. Ruzzo
- Cyberinfrastructure for PathoSystems Biology / Bruno W.S. Sobral
- Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites / Joel Rozowsky, Paul Bertone, Thomas Royce, Sherman Weissman, Michael Snyder, Mark Gerstein
- [Pt. 2] Full paper:
- Perturbing Thermodynamically Unfeasible Metabolic Networks / R. Nigam and S. Liang
- Protein Cellular Localization with Multiclass Support Vector Machines and Decision Trees / Ana Carolina Lorena and Andr ̌C.P.L.F. de Carvalho
- Combining One-Class Classifiers for Robust Novelty Detection in Gene Expression Data / Eduardo J. Spinosa and André C.P.L.F. de Carvalho
- Evaluation of the Contents of Partitions Obtained with Clustering Gene Expression Data / Katti Faceli, Andr ̌C.P.L.F. de Carvalho, Marcílio C.P. de Souto
- Machine Learning Techniques for Predicting Bacillus subtilis Promoters / Meika I. Monteiro, Marcilio C.P. de Souto, Luiz M.G. Gonçalves, Lucymara F. Agnez-Lima
- An Improved Hidden Markov Model Methodology to Discover Prokaryotic Promoters / Adriana Neves dos Reis and Ney Lemke
- Modeling and Property Verification of Lactose Operon Regulation / Marcelo Cezar Pinto, Luciana Foss, José Carlos Merino Mombach, Leila Ribeiro
- YAMONES: A Computational Architecture for Molecular Network Simulation / Guilherme Balestieri Bedin and Ney Lemke
- Structure Prediction and Docking Studies of Chorismate Synthase from Mycobacterium Tuberculosis / Cláudia Lemelle Fernandes, Diógenes Santiago Santos, Luiz Augusto Basso, Osmar Norberto de Souza
- Analysis of the Effects of Multiple Sequence Alignments in Protein Secondary Structure Prediction / Georgios Joannis Pappas Jr. and Shankar Subramaniam
- Tests of Automatic Annotation Using KOG Proteins and ESTs from 4 Eukariotic Organisms / Maurício de Alvarenga Mudado, Estevam Bravo-Neto, José Miguel Ortega
- Diet as a Pressure on the Amino Acid Content of Proteomes / Francisco Prosdocimi and J. Miguel Ortega
- A Method for Comparing Three Genomes / Guilherme P. Telles, Marcelo M. Brigido, Nalvo F. Almeida, Carlos J.M. Viana, Daniel A.S. Anjos, Maria Emilia M.T. Walter
- Comparison of Genomic DNA to cDNA Alignment Methods / Miguel Galves and Zanoni Dias
- Segmentation and Centromere Locating Methods Applied to Fish Chromosomes Images / Elaine Ribeiro de Faria, Denise Guliato, Jean Carlo de Sousa Santos
- [Pt. 3] Extended abstracts:
- Sequence Motif Identification and Protein Family Classification Using Probabilistic Trees / Florencia Leonardi and Antonio Galves
- Prediction of Myotoxic and Neurotoxic Activities in Phospholipases A2 from Primary Sequence Analysis / Fabiano Pazzini, Fernanda Oliveira, Jorge A. Guimarês, Hermes Lus̕ Neubauer de Amorim
- Genomics and Gene Expression Management Tools for the Schistosoma Mansoni cDNA Microarray Project / Venancio Thiago. M., DeMarco Ricardo, Oliveira Katia C.P., Simoes Ana Carolina Quirino, da Silva Aline Maria, Verjovski-Almeida Sergio
- SAM Method as an Approach to Select Candidates for Human Prostate Cancer Markers / ACQ Simoes, AM da Silva, S Verjovski-Almeida, EM Reis
- New EST Trimming Strategy / Christian Baudet and Zanoni Dias
- A Modification of the Landau-Vishkin Algorithm Computing Longest Common Extensions via Suffix Arrays / Rodrigo de Castro Miranda and Mauricio Ayala-Rincón The BioPAUÁ Project: A Portal for Molecular Dynamics Using Grid Environment / Alan Wilter, Carla Osthoff, Cristiane Oliveira, Diego E.B. Gomes, Eduardo Hill, Laurent E. Dardenne, Patrícia M. Barros, Pedro A.A.G.L. Loureiro, Reynaldo Novaes, Pedro G. Pascutti
- Analysis of Structure Prediction Tools in Mutated MeCP-2 / Dino Franklin and Ivan da Silva Sendin
- Protein Loop Classification Using Artificial Neural Networks / Armando Vieira and Baldomero Oliva
- VIZ
- A Graphical Open-Source Architecture for Use in Structural Bioinformatics / Ricardo M. Czekster and Osmar Norberto de Souza
- Selection of Data Sets of Motifs as Attributes in the Process of Automating the Annotation of Proteins℗ Keywords / Ana L.C. Bazzan and Cassia T. dos Santos
- Bioinformatics Tools for HIV-1 Identification in Southern Brazilian States / Ardala Breda, Clùdia Lemelle Fernandes, Sabrina Esteves de Matos Almeida, Heitor Moreira Franco, Maria Lúcia Rosa Rossetti, Rosângela Rodrigues, Lus̕ Fernando Brígido, Elizabeth Cortez-Herrera
- Fact and Task Oriented System for Genome Assembly and Annotation / Luciano A. Digiampietri, Julia M. Perdigueiro, Aloisio J. de Almeida Junior, Daniel M. Faria, Eric H. Ostroski, Gustavo G.L. Costa, Marcelo C. Perez
- A Clustering Strategy to Find Similarities in Mycoplasma Promoters / João Francisco Valiati and Paulo Martins Engel
- Gene Prediction by Syntenic Alignment / Said Sadique Adi and Carlos Eduardo Ferreira
- Real Time Immersive Visualization and Manipulation of the Visible Human Data Set / Ilana de Almeida Souza, Claudiney Sanches Junior, André Luiz Miranda da Rosa, Patrícia Trautenmüller, Thiago Tognoli Lopes, Marcelo Knörich Zuffo.